CESSHIV-1 database

General information on HIV-1 isolate

# 409

Accession number	AY772696
Name	03ZASK116B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-116

AY772696 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tgtggcagtg tggaaaatct ctagaagtgg cgcccgaaca gggacctgaa agcgaaagta agaccagaga agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy