CESSHIV-1 database

General information on HIV-1 isolate

# 513

Accession number	AY878055
Name	04ZASK183B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-183

AY878055 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agtgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy