CESSHIV-1 database

General information on HIV-1 isolate

# 517

Accession number	AY878059
Name	04ZASK180B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-180

AY878059 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagatcctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagaga agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy