CESSHIV-1 database

General information on HIV-1 isolate

# 525

Accession number	AY878067
Name	04ZASK038B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-038

AY878067 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaagta agaccagagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy