CESSHIV-1 database

General information on HIV-1 isolate

# 434

Accession number	AY901971
Name	03ZASK078B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-078

AY901971 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaac tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

DQ093597(#501) DQ351225(#624)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy