CESSHIV-1 database

General information on HIV-1 isolate

# 435

Accession number	AY901972
Name	04ZASK082B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-082

AY901972 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt tgtggtagtg tgaaaaatct ctagcagtgg cgcccgaaca gggacgcgaa agcgaaggta aaaccagaga agttctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy