CESSHIV-1 database

General information on HIV-1 isolate

# 464

Accession number	DQ011174
Name	04ZASK185B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-185

DQ011174 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta agaccagaga agttctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy