CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 489
Accession number DQ093585
Name 04ZASK083B2
SubtypeC
CountrySouth Africa
Sampling year 2004
Patient083B2

DQ093585 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtga gaccagagga gatctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy