CESSHIV-1 database

General information on HIV-1 isolate

# 496

Accession number	DQ093592
Name	03ZAPS079B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	079B1

DQ093592 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt gttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta ggaccagaga agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy