CESSHIV-1 database

General information on HIV-1 isolate

# 548

Accession number	DQ164111
Name	04ZAPS201B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	201B1

DQ164111 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccttt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcagggc

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy