CESSHIV-1 database

General information on HIV-1 isolate

# 619

Accession number	DQ351220
Name	02ZAPS006MB1
Subtype	C
Country	South Africa
Sampling year	2002
Patient	PS-006M

DQ351220 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccctt cgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agtgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy