CESSHIV-1 database

General information on HIV-1 isolate

# 623

Accession number	DQ351224
Name	03ZAPS017MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	PS-017M

DQ351224 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaag tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggaccagaa agtgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy