CESSHIV-1 database

General information on HIV-1 isolate

# 626

Accession number	DQ351227
Name	03ZAPS043MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	043MB

DQ351227 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

Isolates with identical sequences of region:

AB191651(#1177) DQ093596(#500)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy