CESSHIV-1 database

General information on HIV-1 isolate

# 655

Accession number	DQ369989
Name	03ZAPS057MB2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	057MB

DQ369989 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagaga agatctctcg acgcagggc

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy