CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 660
Accession number DQ369994
Name 05ZASK247B1
SubtypeC
CountrySouth Africa
Sampling year 2005
Patient247B1

DQ369994 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagatcatt ttggt-agtgt ggaaaatctc tagcagtggc gcctgaacag ggactcgaaa gcgaaagtag aaccagagga gatctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy