CESSHIV-1 database

General information on HIV-1 isolate

# 703

Accession number	DQ396381
Name	04ZASK169B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	169B1

DQ396381 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtatga ctctggtaac tagagatccc tcagaccaat tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy