CESSHIV-1 database

General information on HIV-1 isolate

# 721

Accession number	DQ396399
Name	03ZAPS152MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	152MB

DQ396399 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagatcctt tttggtagtg tggaaaatct ctagcagtgg cgcctgaaca gggacccgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy