CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1025
Accession number EF175210
Name WC3_0498_2
SubtypeB
CountryUSA
Sampling year 1998
PatientWC3

EF175210 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctatggtaac tagagatccc tcagactctt ttagtcagtg tgaaaaatct ctagcagtgg cgcccgaaca gggactcgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012