CESSHIV-1 database

General information on HIV-1 isolate

# 1709

Accession number	EF370189
Name	99KJS6_2886
Subtype	B
Country	South Korea
Sampling year	1999
Patient	KJS

EF370189 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccggagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EF370209(#1712) EF370210(#1713) EF370369(#1796) EU047651(#1847)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy