CESSHIV-1 database

General information on HIV-1 isolate

# 1710

Accession number	EF370198
Name	93LSK10_2788
Subtype	B
Country	South Korea
Sampling year	1993
Patient	LSK

EF370198 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt t-agtcagtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtag aaccagagga gctctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy