CESSHIV-1 database

General information on HIV-1 isolate

# 2233

Accession number	EF370211
Name	94LSH8_2897s1
Subtype	B
Country	South Korea
Sampling year	1994
Patient	LSH

EF370211 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaaatc tctagcagtg gcgcccgaac agggacttga aagcgaaaga gaaaccagag gagctctctc gacgcaggac 

Isolates with identical sequences of region:

EU047600(#2270)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy