CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1724
Accession number EF370238
Name 04JWK7_2380
SubtypeB
CountrySouth Korea
Sampling year 2004
PatientWK(JWK)

EF370238 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgtgggatta ttgtggaaaa agaagctccc tcgcaccttt tttggggagg gggaaaattt tcagcagggg ccgccgcagc gggttctaga gaaagaaagt agagccggag gtcttttctc gcaggcagta t

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy