CESSHIV-1 database

General information on HIV-1 isolate

# 1782

Accession number	EF370343
Name	00YKW1_2711
Subtype	B
Country	South Korea
Sampling year	2000
Patient	YKW

EF370343 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacacct ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy