CESSHIV-1 database

General information on HIV-1 isolate

# 2263

Accession number	EF370389
Name	06CYS6_2738
Subtype	B
Country	South Korea
Sampling year	2006
Patient	CYS

EF370389 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcaaaccatt gtagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg atctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy