CESSHIV-1 database

General information on HIV-1 isolate

# 1386

Accession number	EF545109
Name	RUSP812
Subtype	A1
Country	Russia
Sampling year	2004
Patient	RUSP812

EF545109 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagactgag ta-aaaatctc tagcagtggc gcccgaacag ggactcgaaa gcgaaagtt---c cagagaagtt ctctcgacgc aggac

Isolates with identical sequences of region:

AF254699(#1488) AY932686(#2156)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy