CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2846
Accession number EU170135
Name luBF_15_05
SubtypeCRF42_BF
CountryLuxembourg
Sampling year 2005

EU170135 isolate has foldings of [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttagtccgkg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012