CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1183
Accession number EU786670
Name ES P962
SubtypeG
CountrySpain
Sampling year 2005
PatientP0962

EU786670 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagacagaa ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa acgaaagtta acagggactt gtaagcggaa gttaacgggg actcgaaagc gaaagtt---cca gagaagttct ctcgacgcag gac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012