CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1196
Accession number EU884501
Name ES P1423
SubtypeCRF02_AG
CountrySpain (Angola)
Sampling year 2006
PatientP1423

EU884501 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact cgagaccgtg tagaaaatct ctagcagtgg cgcccgaaca gggaccggaa gttaataggg actcgaaagc gaaagtt---cca gagaagatct ctcgacgcaa gggc

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012