CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2025
Accession number FJ496077
Name 04013226_2_flD7
SubtypeB
CountryUSA
Sampling year 2002
Patient04013226

FJ496077 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

--tggtaatact ctggtaacta gagatccctc agacc-tttta gtcagtgtgg aaaatctcta gcagtggcgc ccgaacaggg acttgaaagc gaaagagaaa ccagaggaga tctctcgacg caggac

Isolates with identical sequences of region:

FJ496072(#2020) FJ496073(#2021) FJ496074(#2022) FJ496075(#2023) FJ496076(#2024) FJ496078(#2026) FJ496079(#2027) FJ496080(#2028)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy