CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2330
Accession number FJ614899
Name 03LKD2_4072
SubtypeCRF02_AG
CountrySouth Korea (Ghana)
Sampling year 2003
PatientLKD

FJ614899 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

ttttgtgtga ctctggaaaa tagagatccc tcagaccact ttag--agtggg taaaattttt agcagtggcg cccgaacagg gactggaagt taatagggac tcgaaagcga aagtt---ccaga gaagttctct tgacgcaggg ac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012