CESSHIV-1 database

General information on HIV-1 isolate

# 2361

Accession number	FJ614944
Name	00MHI10_5014
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2000
Patient	MHI

FJ614944 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ctagcttggg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaag ttaataggga ctcgaaagcg aaagtt---ccag agaagctctc ttgacgcagg gac

Isolates with identical sequences of region:

FJ614942(#2359) FJ614943(#2360) FJ614946(#2363) FJ614949(#2366)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing PBS domain

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy