CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2389
Accession number FJ614968
Name 08MHI11_5585
SubtypeCRF02_AG
CountrySouth Korea (Africa)
Sampling year 2008
PatientMHI

FJ614968 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt atagcttgag ta-aaaatctc tagcagtggc gcccgaacag ggacttgagg ttaataggga ctcgaaagcg aaagtt---ccag agaagctctc tcgacgcagg gac

Isolates with identical sequences of region:

FJ614935(#2352) FJ614959(#2382) FJ614966(#2388)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012