CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3298
Accession number FJ614972
Name 91KDS8_4186
SubtypeCRF02_AG
CountrySouth Korea
Sampling year 1991
PatientKDS

FJ614972 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

cgtgggggga ctcgggtaac tagagatccc tcagaccatt ctagactgag ta-aaaatctc tagcagtggc gcccgaacag ggaccggaag ttaataggga ctcgaaagcg aaagttccag agaagctctc tggacgcagg gac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012