CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3357
Accession number FJ614990
Name 00NYR1_4198
SubtypeCRF02_AG
CountrySouth Korea
Sampling year 2000
PatientNYR

FJ614990 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

agtgtggaga tt-tggtaata agggatccct tcaaccactt ttggagtttg ttaaaaattt ctagcggtgg cgcccgaaca ggtcccggaa gttagtgggg acttgaatgc gaaagtt---cca gggaagatct ctagactcag ggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012