CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3359
Accession number FJ614993
Name 04HAS12_4192
SubtypeCRF02_AG
CountrySouth Korea
Sampling year 2004
PatientHAS

FJ614993 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tcttgtggga atttggtaaa tagagattcc ttaggcccct tttgcaggtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaag gcggaagtta atagggactc gaaagcgaaa gttccagaga agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012