CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3239
Accession number FJ670522
Name X1870
SubtypeCRF14_BG
CountrySpain (Brazil)
Sampling year 2005
PatientX1870

FJ670522 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagttgttg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtta acagggactc gaaagcgaaa gttccagaga agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012