CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3350
Accession number FN392876
Name 97CM_MP814
SubtypeCRF45_cpx
CountryCameroon
Sampling year 1997
PatientMP814

FN392876 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctttggtaac tagagatccc tcagaccact ytagrcggtg ta-aaaatcty tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa aagttccaga gaagatctct cgacgcagga c

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012