CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3282
Accession number GQ386794
Name H1_5p1
SubtypeB
CountrySpain
Sampling year 1989
Patient89ES061

GQ386794 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagaccctt ttaatcagtg tgaaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaaaag aaaccagaga agctctctcg acgcaggac

Isolates with identical sequences of region:

GQ386795(#3283)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy