CESSHIV-1 database

General information on HIV-1 isolate

# 3363

Accession number	GQ999973
Name	CAP30_5w_F4
Subtype	C
Country	South Africa
Sampling year	2004
Patient	CAP30

GQ999973 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

AF254711(#1499) AY901966(#429) DQ275652(#1230) DQ396375(#697)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy