CESSHIV-1 database

General information on HIV-1 isolate

# 3373

Accession number	GQ999983
Name	CAP210_5w
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP210

GQ999983 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcagatcctt tt-gtcagagt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy