CESSHIV-1 database

General information on HIV-1 isolate

# 3375

Accession number	GQ999985
Name	CAP229_7w
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP229

GQ999985 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagaga agatctctcg acgcaggac

Isolates with identical sequences of region:

AY463226(#324) AY878056(#514)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy