CESSHIV-1 database

General information on HIV-1 isolate

# 3376

Accession number	GQ999986
Name	CAP244_8w_F1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	CAP244

GQ999986 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttggt-agtgt ggaaaatctc tagcagtgga acccgaacag ggacttgaaa gcgaaagtaa gaccagagaa gatctctcga cgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy