CESSHIV-1 database

General information on HIV-1 isolate

# 2367

Accession number	L02317
Name	BC, BCSG3
Subtype	B
Country	USA
Sampling year	1987
Patient	BCSG3

L02317 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtagc tagagatccc tcataccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggaccggaa agcgaaagag aaaccagagg agctctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy