CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 5027
Accession number PBS-04RU1147
Name 04RU1147-PBS-(EU938121/FJ503058)
Subtype
Country
Submitted to NCBI

PBS-04RU1147 isolate has foldings of [PBS region] [Complete poly(A) region] .

The region encompassing PBS domain

The primary sequence:

tgttg----actct ggtaactaga gatcc-tcaga ccactctagg cggtgt--aaaa tctctagcag tggcgcccga -cagggacttg aaagcgaaag tt---ccagagaa gttctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012