CESSHIV-1 database

General information on HIV-1 isolate

# 254

Accession number	U69584
Name	WCIPR clone 54
Subtype	B
Country	USA
Sampling year	1985
Patient	WC1-001

U69584 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagag aaaccagaga agctctctcg acgcaggac

Isolates with identical sequences of region:

AY851682(#2103) U69585(#255)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy