CESSHIV-1 database

General information on HIV-1 isolate

# 2558

Accession number	U80539
Name	RP3
Subtype	B
Country	Venezuela
Sampling year	1995
Patient	RP3

U80539 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta gaaccagagg agctctctcg acgcaggac

Isolates with identical sequences of region:

EF370307(#1755) EF370312(#1760) U23487(#18)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy