CESSHIV-1 database

General information on HIV-1 isolate

# 960

Accession number	AB289589
Name	p01JPDR3884B08
Subtype	B
Country	Japan
Sampling year	2001
Patient	388

AB289589 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatttgag cctgggagct ctctggctaa ctaggggacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta aagtagtgtg tgcccgtctg ttgtgtgact ctggtaa

Isolates with identical sequences of region:

AB289590(#959)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Core poly(A) site

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy