CESSHIV-1 database

General information on HIV-1 isolate

# 1327

Accession number	AF196764
Name	93RO205
Subtype	F1
Country	Romania
Sampling year	1993

AF196764 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctagttagac cagatttgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtttgactc tggtaa

Isolates with identical sequences of region:

AB485658(#2749) AB485659(#2750)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy