CESSHIV-1 database

General information on HIV-1 isolate

# 1949

Accession number	AF239627
Name	PAIR13_MOTHER
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	13-mother

AF239627 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctaggtagac cagatctgag cctgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB191653(#1179) AB485647(#2727) AY047300(#3156) AY932717(#2187)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy