CESSHIV-1 database

General information on HIV-1 isolate

# 1956

Accession number	AF239634
Name	PAIR12_MOTHER
Subtype	U
Country	Tanzania
Sampling year	1996
Patient	12-mother

AF239634 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagatttgag cctgagagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AF239640(#1962) AF254707(#1495) AF254731(#1518)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy